Mobile Chemistry Portal

hosted by J. Heyrovskı Institute of Physical Chemistry of the CAS, v.v.i.
(Department of Molecular Electrochemistry and Catalysis)

 























 

YAeHMOP

Author

Greg Landrum (author), Wingfield Glassey (contributor)

Homepage

The project homepage contains the sources, binaries, manuals and lots of other usefull stuff. The project is located at sourceforge as well.

Source

Source code is available in the project homepage and at sourceforge.

Reference

Landrum, G. A., and W. V. Glassey. "YAeHMOP (Yet Another Extended Hückel Molecular Orbital Package)." Cornell University, Ithaca, NY (1995).

Description & Use

YAeHMOP is used for extended Hückel method for both molecular and condensed state. It consists of two main (and few other additional) codes: bind (the core executable) and viewkel (visualization program, not actualy compiled for Android).

Structure of a typical input file includes e.g.:

; the title
[title] 

; it's a molecular calculation, tell the program that
molecular 

; Cartesian coordinates in Angstroms
geometry

[number of atoms]
[atom symbol] [x] [y] [z]
... (this part actually corresponds to a standard .xyz file,
produced e.g. by Atomdroid
)
 

charge
[overall charge] 

orbital occupations
; the number of occupations to change
[number]
; the orbitals and new occupation
[number of orbital] [number of electrons inside]
... 

print
distance matrix
charge mat transpose
wave func transpose
net charges
overlap pop
reduced overlap pop
end_print
 

The input file and parameter file must be saved in the same location where the YAeHMOP executable resides.

Use in command line / shell:

bind [input file] [parameter file]
(in Windows command line)

or

./ bind [input file] [parameter file]
(in Android shell).

The result will appear in the same location.

Program status

The current package contains YAeHMOP binaries of version 3.0 compiled for the particular hardware platforms.   

License

YAeHMOP

The distribution is published for free at Mobile Chemistry Portal and Google Play Store with kind permission of Greg Landrum.

Copyright (C) 1995 Greg Landrum
All rights reserved 

This file is part of yaehmop. 

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 

1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 

2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

MinGW

The Windows version contains few essential dynamic link libraries and unix2dos binary which are part of MinGW runtime.

Copyright (c) 2012 MinGW.org project

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice, this permission notice and the below disclaimer shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

X11-Basic

GUI of the Windows version was built using X11-Basic (by Markus Hoffmann) framework (GPL v.3). For correct functionality, SDL library (available under GNU LGPL license) is included in package.

Advanced Installer

The MSI installer for Windows was created using the Advanced Installer (Freeware edition).

Distribution

(A) Self-extracting installers with graphical user interface (recommended for most users)

Android
(Google Play Store)
Windows (x86)

(B) Binaries and corresponding documentation (for advanced users)

Android up to 4.4 (Kitkat) (obsolete)

In case of your interest, please contact us by e-mail.

Android 5.0 (Lollipop) und later (position independent executables)

aarch64 arm x86 x86_64

Windows version

x86